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Water Quality - Permits

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Welcome to the Permits Section

We issue legally binding permits for the discharge of pollutants to state waters, including surface waters and some groundwater.

Our job is to ensure that the discharge permits we issue protect the beneficial uses of those waters (domestic water supply, aquatic life, agriculture, recreation, and wetlands).

 

Clean water permitting sectors (permits by category)

Our clean water permit sectors page provides information about commerce and industry, construction, municipal separate storm sewer systems (MS4), domestic sewage systems, biosolids, pesticides, reclaimed water, pretreatment, and contacts.

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  • Senate Bill 89-181 governs the protection of groundwater quality and discharges to groundwater among several implementing state agencies.
  • The discharge of dredge and fill materials into state waters is excluded from the definition of discharge pollutants and is regulated by a different program.
  • The Environmental Agriculture Program regulates the discharge of pollutants to state waters and other items related to animal feeding operations.

Links to Permitting Resources and References

Stakeholder Participation

Prioritization for Individual Permit Renewals and Annual Permit Work Plan

Individual process water permits to surface water have historically been renewed under a basin schedule. The Permits Section started renewing permits in a major watershed basin the year after the Water Quality Control Commission considered changes to water quality standards for that basin. 

In 2025, the Commission formalized changes in how they determine whether a proposal to change water quality standards (Regulations 31-38) is ripe and when to address the proposal. This occurs through Policy 25-1 and a Future Issues for Standards Hearings (FISH) list. Further information is available on the Commission’s webpage at https://cdphe.colorado.gov/wqcc-public-participation. 

The division has historically used these criteria to prioritize individual permit renewals. Currently, we are engaging with stakeholders on how to prioritize individual permit renewals through the Permit Performance Improvement and Reporting workgroup, and this will be reflected in an annual permit work plan. The federal fiscal year (FFY) 2026 Permit Work Plan guides the work this year, and the division regularly shares its progress during the quarterly Clean Water webinars.